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+%{
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+Copyright © 2020 Alexey A. Shcherbakov. All rights reserved.
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+
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+This file is part of GratingFMM.
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+
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+GratingFMM is free software: you can redistribute it and/or modify
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+it under the terms of the GNU General Public License as published by
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+the Free Software Foundation, either version 2 of the License, or
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+(at your option) any later version.
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+
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+GratingFMM is distributed in the hope that it will be useful,
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+but WITHOUT ANY WARRANTY; without even the implied warranty of
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+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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+GNU General Public License for more details.
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+
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+You should have received a copy of the GNU General Public License
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+along with GratingFMM. If not, see <https://www.gnu.org/licenses/>.
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+%}
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+%% description:
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+% calculation of a grating S-matrix by the Fourier Modal Method
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+% in the case of the collinear diffraction by 1D gratings being periodic in x
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+% dimension of the Cartesian coordinates
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+%% input:
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+% no: number of Fourier harmonics
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+% kx0: incident plane wave wavevector x-projection (Bloch wavevector)
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+% kg: wavelength-to-period ratio (grating vector)
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+% kh: grating depth multiplied by the vacuum wavenumber
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+% eps1: permittivity of the substrate
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+% eps2: permittivity of the superstrate
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+% FE: Fourier matrix of the grating profile
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+% pol: polarization, either "TE" or "TM"
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+%% output:
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+% SM: scattering matrix of size (no,no,2,2)
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+% block SM(:,:,1,1) corresponds to refelection from substrate to substrate
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+% block SM(:,:,2,2) corresponds to refelection from superstrate to superstrate
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+% block SM(:,:,2,1) corresponds to transmission from substrate to superstrate
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+% block SM(:,:,1,2) corresponds to transmission from superstrate to substrate
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+% central harmonic index is ind_0 = ceil(no/2)
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+% for example, an ampitude of the transmitted wave to i-th diffraction order
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+% from the substrate to the superstrate under the plane wave illumination
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+% with unit amplitude is SM(ind_0+i, ind_0, 2, 1)
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+%% implementation
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+function [SM] = fmm(no, kx0, kg, kh, eps1, eps2, FE, pol)
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+ % wavevector projections
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+ [kz1, kz2, kx] = fmm_kxz(no, kx0, 0, kg, eps1, eps2);
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+ % block indices
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+ ib1 = 1:no;
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+ ib2 = no+1:2*no;
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+ % solve the eigenvalue problem:
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+ ME = toeplitz(FE(no:2*no-1,1),FE(no:-1:1,1)); % permittivity Toeplitz matrix
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+ if (strcmp(pol,'TE')) % if TE polarization
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+ ME(1:no+1:end) = ME(1:no+1:end) - (kx.^2);
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+ [EV,MB] = eig(ME);
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+ beta = transpose(sqrt(diag(MB)));
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+ % check the branch of the square root
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+ ind = angle(beta) < -1e-7;
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+ beta(ind) = -beta(ind);
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+ % eigen vector of the magnetic field
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+ HV = -EV.*beta; % Hx
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+ else % if TM polarization
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+ MU = eye(no) / toeplitz(FE(no:2*no-1,2),FE(no:-1:1,2)); % inverce permittivity Toeplitz matrix
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+ ME = -(diag(kx) / ME).*kx;
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+ ME(1:no+1:end) = ME(1:no+1:end) + 1;
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+ [EV,MB] = eig(ME*MU);
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+ beta = transpose(sqrt(diag(MB)));
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+ % check the branch of the square root
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+ ind = angle(beta) < -1e-7;
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+ beta(ind) = -beta(ind);
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+ % eigen vector of the magnetic field
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+ HV = (MU*EV)./beta;
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+ end
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+
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+ bexp = exp((1i*kh)*beta);
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+ % apply the boundary conditions:
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+ TS = fmm_calc_T(no,EV,HV,kz1,eps1,pol); % susbtrate-grating T-matrix
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+ TC = fmm_calc_T(no,EV,HV,kz2,eps2,pol); % grating-cover T-matrix
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+ % combine T-matrices
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+ M1 = zeros(2*no,2*no);
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+ M2 = zeros(2*no,2*no);
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+ M1(ib1,ib1) = TS(ib2,ib1);
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+ M1(ib1,ib2) = TS(ib2,ib2).*bexp;
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+ M1(ib2,ib1) = TC(ib1,ib1).*bexp;
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+ M1(ib2,ib2) = TC(ib1,ib2);
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+ M2(ib1,ib1) = TS(ib1,ib1);
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+ M2(ib1,ib2) = TS(ib1,ib2).*bexp;
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+ M2(ib2,ib1) = TC(ib2,ib1).*bexp;
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+ M2(ib2,ib2) = TC(ib2,ib2);
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+
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+ SM = M2S(M1/M2);
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+end
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+
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+
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+
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+
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